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Using Local Tools: BLAST

Using Local Tools: BLAST. BCHB524 2008 Lecture 11. Outline. Install and run blast from NCBI Download Format sequence databases Run by hand Running blast and interpreting results Directly and using BioPython Exercises Lecture 9 exercises. Local Tools.

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Query Sequence (Fasta). Graphical User Interface (Web Browser). Upload. CLIENT SIDE. LOCAL SERVER. REMOTE SERVER. Query Blaster. Client Interface Module. Sequence Reader. Assembled Sequences (Fasta). (Web Server). Blast Result. Summary Files. XML. NCBI/ EBI/ KEGG. Blast Engine.

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Query Sequence (Fasta). Graphical User Interface (Web Browser). Upload. CLIENT SIDE. SERVER SIDE. Assembled Sequences (Fasta). Sequence Reader. Client Interface Module. (Web Server). Summary Files. NCBI/ EBI. Blast Engine. Blast Result. XML. BLAST DB. Summary Reader.

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Using Local Tools: BLAST

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