'Protein sequences' presentation slideshows

Marie-Claude.Blatter@isb-sib.ch Swiss-Prot group, Geneva SIB Swiss Institute of Bioinformatics

The UniProt knowledgebase www.uniprot.org a hub of integrated protein data http://education.expasy.org/cours/Turin/. Marie-Claude.Blatter@isb-sib.ch Swiss-Prot group, Geneva SIB Swiss Institute of Bioinformatics. Protein sequences.

875 views • 75 slides

Protein Secondary Structure Prediction PSSP

Protein Secondary Structure Prediction PSSP. Anita Wasilewska Computer Science Department SUNY at Stony Brook, Stony Brook, NY, USA Victor Robles Forcada Department of Computer Architecture and Technology Technical University of Madrid, Madrid, Spain

980 views • 74 slides

Lecture outline

Sequence alignment Why do we need to align sequences? Evolutionary relationships Gaps and scoring matrices Dynamic programming Global alignment (Needleman & Wunsch) Local alignment (Smith & Waterman) Database searches BLAST FASTA. Lecture outline. Complete DNA Sequences.

953 views • 70 slides

Applied Bioinformatics

Week 08. Applied Bioinformatics. Theory I. Protein Sequences Protein Families Protein Domains Computer Learning Garbage in -> Garbage out Prediction based on learned Examples. Protein Sequence. Primary Sequence consisting of 20 amino acids Secondary Structure consists of 3 types

779 views • 64 slides

UniProtKB

Sandra Orchard. UniProtKB. Importance of reference protein sequence databases. Completeness and minimal redundancy A non redundant protein sequence database, with maximal coverage including splice isoforms, disease variant and PTMs.

746 views • 61 slides

Based on a Lecture by Gary Benson, Departments of Computer Science and Biology,

Searching for Similarities in Genetic and Proteomic Sequences Dr. Jaume Bacardit Prof. N. Krasnogor. Based on a Lecture by Gary Benson, Departments of Computer Science and Biology,

681 views • 58 slides

Computing Patterns in Biology

Systems biology - figure out circuits. of regulation, predict outcome ... Very simple to find these patterns - can even use the

1.1k views • 56 slides

CSE/Beng/BIMM 182: Biological Data Analysis

CSE/Beng/BIMM 182: Biological Data Analysis. Instructor: Vineet Bafna TA :. www.cse.ucsd.edu/classes/ fa13/ cse182-a. Today. We will explore the syllabus through a series of questions? Please ASK All logistical information will be given at the end. Introduction to the class:Databases.

638 views • 50 slides

Bioinformatics databases

Bioinformatics databases. What is a biological database?. Library of life sciences information, collected from scientific experiments, published literature, high-throughput experiment technology, and computational analyses.

634 views • 40 slides

Visualization of genomic data

508 views • 37 slides

Biological Databases

Biological Databases. Biologists Collect Lots of Data. Hundreds of thousands of species Millions of articles in scientific journals Genetic information: gene names phenotype of mutants location of genes/mutations on chromosmes linkage (distances between genes).

515 views • 37 slides

Joint EBI-Wellcome Trust

Joint EBI-Wellcome Trust. Summer School 14-18 June 2010. Concepts, historical milestones & the central place of bioinformatics in modern biology: a European perspective.

493 views • 35 slides

Phylogenetic inference on the evolution of protein-coding genes

Phylogenetic inference on the evolution of protein-coding genes. Lecture 1: The evolution of protein coding genes Jesse Bloom, jbloom@fhcrc.org.

494 views • 33 slides

UniProt - The Universal Protein Resource

654 views • 31 slides

BCB 444/544

BCB 444/544. Lecture 29 Phylogenetics #29_Oct31. Required Reading ( before lecture). Mon Oct 29 - Lecture 28 Promoter & Regulatory Element Prediction Chp 9 - pp 113 - 126 Wed Oct 30 - Lecture 29 Phylogenetics Basics Chp 10 - pp 127 - 141 Thurs Oct 31 - Lab 9

518 views • 30 slides

Tutorial 4 Comparing Protein Sequences

Tutorial 4 Comparing Protein Sequences. Intro to Bioinformatics. Amino acids were not born equally. Comparing Protein Sequences. Substitution Matrices PAM - Point Accepted Mutations BLOSUM - Blocks Substitution Matrix Advance comparison tools Psi-BLAST Phi-BLAST. Substitution Matrix.

643 views • 22 slides

DNA and Amino Acids

DNA and Amino Acids. Molecular Structure Lecture 3. Chromosome to DNA molecule. A chromosome is essentially a long strand of DNA wound around proteins; e.g. histones , to form condensed structure called chromatin.

326 views • 14 slides

A protein domain interaction interface database: InterPare

A protein domain interaction interface database: InterPare. Sungsam Gong1,2, Changbum Park3, Hansol Choi2, Junsu Ko7, Insoo Jang1, Jungsul Lee4, Dan M Bolser5, Donghoon Oh7, Deok-Soo Kim6 and Jong Bhak*1,8. Reporter: Yu Lun Kuo E-mail: sscc6991@gmail.com Date: May 22, 2007. Abstract.

232 views • 13 slides

Multiple Sequence Alignment

Multiple Sequence Alignment. Multiple Alignment- First pair. Align the two most closely-related sequences first.

221 views • 9 slides

Evolution and Human Origins

Evolution and Human Origins. Common Ancestors. Closeness of relationship is reflected by greater DNA sequence similarity i.e. the closer 2 species are in relation to each other, the more DNA sequences they will share Similar sequences are likely to have arisen from a common ancestor.

220 views • 8 slides