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Transcriptomics

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Transcriptomics

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    1. Transcriptomics Patrick Kemmeren European Bioinformatics Institute Genomics Lab, UMC Utrecht

    2. What are microarrays ?

    4. Microarray data and annotation

    5. Traditions of data sharing in Life Sciences Data used in publications should be made available so that the experiments can be reproduced and the conclusions can be verified the others can build on other’s results In genome sequencing this has evolved into submissions to public sequence databases DDBJ/EMBL/Genbank – most journals require such submissions

    6. Sharing microarray data – which data?

    7. MGED standards - MIAME

    8. MGED – MIAME

    9. Microarray experiment

    11. MIAMExpress

    12. MIAMExpress schema

    14. ArrayExpress http://www.ebi.ac.uk/arrayexpress A public repository for microarray data at the EBI

    17. ArrayExpress data - by organism

    18. Screenshot 2.2Screenshot 2.2

    19. Screenshot 2.3Screenshot 2.3

    21. Gene-centric Query Prototype

    22. Gene-centric Query Prototype

    23. Gene-centric Query Prototype

    32. Available Components

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