1 / 28

Desktop as a Service using Moka5+VMWare+BioSlax

Desktop as a Service using Moka5+VMWare+BioSlax . its potential for Grid and Cloud Computing. Tan Tin Wee Dept of Biochemistry Yong Loo Lin School of Medicine National University of Singapore. Merging two trajectories. LiveCD/DVD/USB/VM. eScience and Grid Computing.

Olivia
Download Presentation

Desktop as a Service using Moka5+VMWare+BioSlax

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Desktop as a Service using Moka5+VMWare+BioSlax its potential for Grid and Cloud Computing Tan Tin Wee Dept of Biochemistry Yong Loo Lin School of Medicine National University of Singapore

  2. Merging two trajectories LiveCD/DVD/USB/VM eScience and Grid Computing • APBioGrid : Globus Grid 1.1.6/7– Ong Guan Sin (2002) • APBioBox 1 and 2 with Sun’s BioClusterGrid/BioBox and KOOPLite workflow integration • APBioKnoppix 1 and 2 LiveCD- Derek Kiong, Justin Choo (2003-2006) • BioSlax LiveCD- Mark de Silva and Lim Kuan Siong (2005-2009) • BioSlax LiveDVD, LiveUSB, VMplayer (2007-2009) • BioSlax Server (2008-2009) • BioSlax7.5-VMplayer-MokaFive (2009) • UDBlast-BioSlax-VMplayer-MokaFive (2009) • SINGAREN (1998) • Telemanufacturing, eScience, remote control of Synchrotron beam line (1999-2001) • NUS BioGrid and APBioGrid (2001-2002) • National Grid and LSVGC database (2004-2005) • BioManufacturing Grid (SERC Proof of Concept for Integrated Manufacturing and Services Systems (IMSS) grant) (2004-2006)- KOOPrime’sKOOPlatform- SIMTech and NTU- APSTC Sun Microsystems • TeraCampus Grid TCG@NUS (2005-2009) • 1st World Wide Workflow Grid- Chris Baker (2008)

  3. NUS BioGrid and APBioGrid2001-2002 http://www.bic.nus.edu.sg/biogrid/ http://www.startap.net/starlight/igrid2002/apbiogrid02.html

  4. APBioBox 2002-2004 http://compaq.apbionet.org/grid/apbiobox/http://compaq.apbionet.org/grid/apbiobox/lsvgcApr04/index.shtml

  5. National Grid Office and LS VGC http://lsdb.bii.a-star.edu.sg/

  6. APBioKnoppix (2004-2006)Bioinformatics in a LiveCD Used by 500 NUS students a year in Life Science Module LSM2104 from 2004 to 2007 http://compaq.apbionet.org/grid/apbioknoppix/

  7. Integrated Biolaboratory Manufacturing and Services System 2004-2005 A TSRP pilot project Group 9 Project 042-112-0020 Integrated Manufacturing and Services Systems (IMSS) For acceleration of specific areas of manufacturing, in particular biomanufacturing. www2.jp.apan.net/meetings/bangkok2005/presentation/tantinwee-APAN19-eScienceBKKJan05.ppt

  8. 1st WWWFG 2007 http://www.apbionet.org/wwwfg/programme.shtml

  9. TeraCampusGrid TCG@NUS 2005-2009

  10. Grid Apps on TCG@NUS Grid http://www.nus.edu.sg/comcen/ svu/services/gridapps.htm

  11. UDBlast at TCG@NUS http://srs1.bic.nus.edu.sg/udblast.html http://srs1.bic.nus.edu.sg/udblast_checkjob.html http://srs1.bic.nus.edu.sg/udblast_retrieve.html

  12. http://conference.nie.edu.sg/2007/

  13. Moka5+VMWare+BioSlax Merged two trajectories LiveCD/DVD/USB/VM eScience and Grid Computing • APBioGrid : Globus Grid 1.1.6/7– Ong Guan Sin (2002) • APBioBox 1 and 2 with Sun’s BioClusterGrid/BioBox and KOOPLite workflow integration • APBioKnoppix 1 and 2 LiveCD- Derek Kiong, Justin Choo (2003-2006) • BioSlax LiveCD- Mark de Silva and Lim Kuan Siong (2005-2009) • BioSlax LiveDVD, LiveUSB, VMplayer (2007-2009) • BioSlax Server (2008-2009) • BioSlax7.5-VMplayer-MokaFive (2009) • UDBlast-BioSlax-VMplayer-MokaFive (2009) • SINGAREN (1998) • Telemanufacturing, eScience, remote control of Synchrotron beam line (1999-2001) • NUS BioGrid and APBioGrid (2001-2002) • National Grid and LSVGC database (2004-2005) • BioManufacturing Grid (SERC Proof of Concept for Integrated Manufacturing and Services Systems (IMSS) grant) (2004-2006)- KOOPrime’sKOOPlatform- SIMTech and NTU- APSTC Sun Microsystems • TeraCampus Grid TCG@NUS (2005-2009) • 1st World Wide Workflow Grid- Chris Baker (2008) On TCG@NUS

  14. www.BIOSLAX.com (2006-2009)

  15. BioSlax with VMplayerBioinformatics software in a virtual machine Packages Applications Programming languages – C, perl, python etc GUI interfaces Servers – apache, mysql No need to reboot, just install VMplayer, run BioSlax vmx file and create a new instance of a BioSlax virtual machine

  16. Rapid and Easy Customisable Interface

  17. Modules e.g. newmodule.lzm Stored in /mnt/sda1/modules Activated during boot up Addable Modules Compile –> dir2lzm -> copy into virtual HDD /mnt/sda1/module

  18. Persistent Changes changes=/mnt/sda1/changes To change the boot up sequence for starting any program Add /etc/rc.d/rc.newprog

  19. BioSlax 7.5 • Bootable with changes • LiveCD, LiveDVD, LiveUSB • BioSlax-VMplayer version • MokaFive version portable on Intel Machines • What has it/can it be used for? • Desktop-as-a-Service • UDGridmpagentftp://sf01.bic.nus.edu.sg/incoming/bioslax/fixes/zz01_grid_mpagent.lzm

  20. BioSlax with VMplayer+MokaFive • Downloadable from MokaFive server • Multiple instantiations • Shoppable • Cacheable LivePC • No need for installation • Portable on a USB • Rapid deployment – user initiated

  21. BioSlax+VM+MokaFive: Desktop-as-a-Service

  22. Desktop-as-a-Service

  23. Grid-enabling BioSlax:UD MP agent in BioSlax • History – TCG@NUS • UDBlast and UDHMMer • Rapid recruitment of machines • No need for user installation • Push or pull instances • Enduser joining of Grid

  24. Joining a virtual machine to TCG@NUS http://srs1.bic.nus.edu.sg/uddevlist.html

  25. UD-BioSlax-VMware-Moka5 • How Desktops-as-a-Service can be used for harnessing free cpu cycles quickly • End-users and members of the public can contribute • “Contribute-to-Benefit” model – enduser can log in to monitor their “credits” depending on how much CPU time they have contributed and how much they pay. • Creation of public participation grid computing and public recruitment of grid-enabled processors without interfering with Enduser’s machine. • Inter-Grid functionality – deploy instances of UD-BioSlax on multiple clouds

  26. Moka5 can do push the updateAlternatively, BioSlax can do PXE boot • Endusers can run the agent whenever they want to • MPagent wrapped in BioSlax, played in Vmplayer, pushed by Moka5 is portable • UD Mpagent updates require reinstallation. • Variation of the scheduler requires reinstallation • Endusers have to install the mpagent. • MPagent not portable

  27. Future Work • BioSlax LivePC pushed to clouds • End users can have BioSlax as a development platform that will work exactly as the BioSlax pushed to the cloud. • Nutch-Hadoop configured on BioSlax and pushed onto Amazon EC2, for example • Bioinformatics datasets will be permanently pushed to EC2 as a common accessible database by data providers for end-users to compute

More Related