Bio Organic Chemistry

1. Bio Organic Chemistry Stereochemistry

2. Review of Isomers

3. Constitutional Isomers (conective isomers) Constitutional isomers differ in the way their atoms are connected

4. Stereo Isomers (configurational isomers) -maintain the same connectivity, but differ in the way their atoms are arranged in space • stereoisomers are compounds with different properties (separateable) but do not readily interconvert (require breaking of a bond)

5. Cis/Trans Isomers • Cis-Trans isomers (geometric isomers) - result from restriction rotation • Compounds with double bonds: • Cis isomer - hydrogens on the same side of the double bond or ring • Trans isomer - hydrogens on the opposite side of the double bond or ring

6. Chiral Isomers Compounds that have a nonsuperimposable mirror Image Image From Yahoo Images Achiral would be something with a superimposable image

7. Nonsuperimposable Mirror Images “Handedness” - hands (gloves) and feet (shoes) have right- and left-handed forms RULE - look for symmetry in a molecule - symmetry breaks chirality

8. Asymmetric Centers • Chiral molecules - generally molecules containing an asymmetric center • Asymmetric (chiral) center - tetrahedral atom bonded to four different groups - indicated with an asterisk (*) • NOTE - molecules may not appear to be different until you go out several atoms

9. One Asymmetric Center Molecules with one asymmetric center can exist as 2 stereoisomers These Two molecules are called Enantiomers and are chiral compounds

10. Enantiomers • Molecules that are mirror images of each other but not superposable.

11. Achiral Molecules Have superimposable mirror images

12. Build a Molecule and Prove it to yourself

13. n 2 • “The number of possible stereoisomers is equal to 2n where n = number of chiral carbons.” Stereoisomers • Stereoisomers possible:

14. Stereoisomers • Stereoisomers possible: 4 1 2 5 3 6

15. Drawing Enantiomers • Solid lines – bonds in the plane of the paper • Solid Wedge – coming out of the paper toward you • Hatched Wedge – going back into space behind the paper • Practice

16. To Name R and S you need to know priority

17. Naming Enantiomers –R/S System • For any pair of enantiomers with one asymmetric center, one member has the R configuration, another has the S configuration. • Step 1 - rank the groups/atoms bonded to the asymmetric center in order of priority - use the same RULES we learned for priority assignment in alkenes • Step 2 - orient the molecule so that the group/atom with the lowest priority (4) is directed away from you - draw an imaginary arrow from the group/atom of highest priority (1) to the group/atom with the next highest priority (2)

18. Naming Enantiomers -R,S System • Step 3 - if the group/atom with the lowest priority is NOT bonded by a hatched wedge, Then visualize yourself holding the group and mentally project your body to the other side of the molecule. Then Make the Determination.

19. Naming Enantiomers -R,S System • RULE - when drawing the arrow from group 1 to group 2, you can draw past the group with the lowest priority (4), but never past the group with the next-lowest priority (3)

20. 5.7 - Naming Enantiomers -R,S System

21. 5.7 - Naming Enantiomers -R,S System

22. 5.7 - Naming Enantiomers -R,S System

23. Enatiomers • Have the same melting points • Have the same boiling points • Have the same solubility ………….So How do you Tell them apart?? Image From Yahoo Images

24. By Using Polarized Light Check out the polarizing plates

25. Polarization

26. Polarization

27. Optical Activity • Interaction with plane-polarized light - light where all the rays/waves oscillate in a single plane • (normal light has ray oscillations in all directions)

28. Optical Activity • A solution of achiral compounds - light emerges with its plane of • polarization unchanged - the solution is optically inactive • A solution of chiral compounds - light emerges with its plane of polarization changed - the solution is optically active and rotates the plane of polarized light clockwise or counterclockwise

29. Optical Activity • Dextrorotatory (+) compounds rotate plane polarized light clockwise • Latin - dextro - “to the right”; sometimes lowercase d is used • Levorotatory (-) compounds rotate plane polarized light counterclockwise • Latin - levo - “to the left”; sometimes lowercase l is used • Do not confuse (+) and (-) with R and S - • (+) and (-) refer to the rotation of plane polarized light - the only way to determine is experimentally • R and S indicate the arrangement of groups around an asymmetric center - this can be determined by looking at the structure of the compound Some S compounds are (+) (dextrorotatory) and some are (-) (levorotatory)

30. Measuring Optical Activity • Polarimeter - Monochromatic (single wavelength) light passes through a series of polarizers and a sample • Look At a Polorizer and How it Works

31. dextrorotatory levorotatory Optical Activity • Rotation... • [] degrees of rotation • consider 2 enantiomers: (+)-2-butanol []= +13.5 o (-)-2-butanol []= -13.5 o

32. Measuring Optical Activity • Specific rotation - rotation of a 1g/mL sample in 10 cm sample tube • RULE - enantiomers have specific rotations of the same magnitude, but different direction (sign) • RULE - equal mixtures of two enantiomers (racemic mixture or racemate) are optically inactive - racemic mixtures are indicated by (±) - Why? • Specific rotations are of same magnitude, but different sign • Concentrations of each enantiomer are equal

33. A B C D A pair of enantiomers A pair of enantiomers More than 1 Chiral Center • Possible isomers is 2n • 2 pairs of enantiomers

34. A B C D More than 1 Chiral Center • Possible isomers is 2n ... realtionship between A and C?

35. A B C D Diastereomers • Diastereomers • Non mirror image stereoisomers diastereomers

39. Only 1 enantiomer “fits” Active site Biological Chiral Compounds • General rule: • Nature makes only one of the many possible stereoisomers. • Examples: • Chloesterol256 stereoisomers possibleOnly 1 is made! • Enzymes and substratesEnantiomer does not “fit”into “active site” Enzyme