'Local sequence alignment' presentation slideshows

Tools for multiple sequence alignment

898 views • 89 slides

Sequential Data Mining

Sequential Data Mining. Jianlin Cheng Department of Computer Science University of Missouri, Columbia 2011. Sequential Data. Sequence data: a series of alphabets or numbers Spatial sequence data : biological sequence, text document, a computer program, web page, a missile trajectory

777 views • 63 slides

Database Searching

Database Searching. BLAST and FastA. Database Homology Searching. Use algorithms to increase efficiency and provide a mathematical basis for searching which can be translated into statistical significance Assumes that sequence, structure and function are interrelated.

902 views • 58 slides

Pairwise sequence Alignment

635 views • 49 slides

Pairwise sequence alignment

Pairwise sequence alignment. Urmila Kulkarni-Kale Bioinformatics Centre, University of Pune, Pune 411 007. urmila@bioinfo.ernet.in. Bioinformatics Databases. Collection of records DNA sequences: GenBank, EMBL Protein sequences: NBRF-PIR, SWISSPROT

735 views • 43 slides

Pairwise sequence alignment

Pairwise sequence alignment. Urmila Kulkarni-Kale Bioinformatics Centre, University of Pune, Pune 411 007. urmila@bioinfo.ernet.in. Bioinformatics Databases. Collection of records DNA sequences: GenBank, EMBL Protein sequences: NBRF-PIR, SWISSPROT

633 views • 43 slides

Bioinformatics Sequence Analysis I

Bioinformatics Sequence Analysis I. Ulf Schmitz ulf.schmitz@informatik.uni-rostock.de Bioinformatics and Systems Biology Group www.sbi.informatik.uni-rostock.de. Outline. Introduction to sequence alignment pair wise sequence alignment The Dot Matrix Scoring Matrices Gap Penalties

1.25k views • 36 slides

Pairwise Sequence Alignment

594 views • 31 slides

What is Bioinformatics?

812 views • 28 slides

Finding Regulatory Signals in Genomes

Finding Regulatory Signals in Genomes. Searching for known signal in 1 sequence. Searching for unknown signal common to set of unrelated sequences. Searching for conserved segments in homologous. Challenges. Combining homologous and non-homologous analysis. Merging Annotations. mouse. pig.

295 views • 16 slides

Dynamic Programming 6.5-6.9

Dynamic Programming 6.5-6.9. Brandon Andrews. Topics. Longest Common Subsequences Global Sequence Alignment Scoring Alignments Local Sequence Alignment Alignment with Gap Penalties Questions. Longest Common Subsequences (LCS). Goal: Looking for sequence similarity between two sequences

270 views • 14 slides

Southern California Bioinformatics Summer Institute

Southern California Bioinformatics Summer Institute. Wendie Johnston, Beverly Krilowicz, Jamil Momand, Sandra Sharp, Nancy Warter-Perez. SoCalBSI Mission. To identify and educate college students for successful careers in bioinformatics. Part of NSF-NIH BBSI Project Grant number EEC-0234129 .

253 views • 9 slides

Southern California Bioinformatics Summer Institute

Southern California Bioinformatics Summer Institute. Wendie Johnston, Beverly Krilowicz, Jamil Momand, Sandra Sharp, Nancy Warter-Perez. SoCalBSI Mission. To identify and educate college students for successful careers in bioinformatics. Part of NSF-NIH BBSI Project

207 views • 9 slides