'Protein id' presentation slideshows

O B E K O N Consortium

O B E K O N Consortium. Application of proteomics methods in the identification of biomarkers, suitable for studying obesity and obesity related diseases. OBECON Consortium. Identifying clinically relevant biomarkers. Biomarker applications. Drug Development. Disease management.

498 views • 35 slides

OBEKON - Proteomika

389 views • 24 slides

Grid Computing The Illinois Bio-Grid

Grid Computing The Illinois Bio-Grid. Alexander B. Schilling, Ph.D. University of Chicago Proteomics Core Lab aschilli@uchicago.edu. Outline. Bio-Medical Informatics Show how computability is growing exponentially Illinois Bio-Grid Describe this Grid founded at DePaul IBG Workbench

331 views • 23 slides

Protein Identification from Tandem Mass Spectra with Probabilistic Language Modeling

Protein Identification from Tandem Mass Spectra with Probabilistic Language Modeling. Yiming Yang 1,2 , Abhay Harpale 1 and Subramanian Ganaphathy 1 1: Language Technologies Institute 2: Machine Learning Department School of Computer Science, Carnegie Mellon University. Outline.

216 views • 20 slides

In-Gel Digestion Why In-Gel Digest? Difficult / impossible to extract intact proteins from the gel

1.08k views • 17 slides

In-Gel Digestion Why In-Gel Digest? Difficult / impossible to extract intact proteins from the gel

412 views • 17 slides

Proteome data integration characteristics and challenges

Proteome data integration characteristics and challenges.

220 views • 15 slides

122 views • 5 slides

Classifier training

Supplementary Figure 1. DIGE analysis. Cluster analysis. ELISA assays. Prediction analysis (LDA). 1. 3. 2. Predictor discovery in training set. Predictor test in testing set. DIGE raw gel images Matched samples SJIA (10 F, 10 Q) POLY (5 F, 5 Q). 2d hierarchical clustering

94 views • 3 slides

2 DGE

MALDI TOF-TOF. Digest Complex Protein Mixture. Protein Spot In-gel Digestion. MDLC. 2 DGE. MS/MS Spectra. Allow for PTM. In-House MASCOT Search ( Macaca Mulatta ). Protein ID. No PTM. Deconvolute. No PTM. De novo Sequence. PEAKS De novo. No Protein ID. Allow for PTM.

174 views • 1 slides