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PGR-Forum European Crop Wild Relative Diversity Assessment and Conservation Forum

PGR-Forum European Crop Wild Relative Diversity Assessment and Conservation Forum 5.-7.2.2003 Thessaloniki. Introduction to WP 3 Workshop on „Data management methodologies“. Sabine Roscher. Outline. Introduction Main area on expertise Interrelation Workshop /

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PGR-Forum European Crop Wild Relative Diversity Assessment and Conservation Forum

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  1. PGR-Forum European Crop Wild Relative Diversity Assessment and Conservation Forum 5.-7.2.2003 Thessaloniki Introduction to WP 3 Workshop on „Data management methodologies“ Sabine Roscher

  2. Outline • Introduction • Main area on expertise • Interrelation Workshop / • Documentation and Information Network • Date and location of WS • Introduction to WS topic - Examples • WS agenda • WS products

  3. Institution • The German Centre for Documentation and Information in Agriculture (ZADI) • is the scientific information institute of the Federal Ministry of Consumer Protection, Food and Agriculture (BMVEL). • Gives Advice and support in all questions of information management for BMVEL and for the Federal Research • Information Centre for Biological Diversity (IBV)

  4. Institution Objectives IBV www.zadi.de/ibv/en/ Collection, documentation and dissemination of information at the national, EU- and international level; Advisory services to German Federal Ministry for Consumer Protection, Food and Agriculture and other Federal and Laender ministries on general issues related to supporting measures and political decision making in the field of genetic resources; Technical and administrative coordinating activities of national, EU- and international measures and programmes; Research and development activities in the area of information and documentation of genetic resources including collection and dissemination of information to improve measures of conservation and sustainable utilization of genetic resources; Secretariat of the envisaged National Board of Genetic Resources for Food, Agriculture and Forestry.

  5. Data bases (selection) • PGRDEU - Collections of Plant Genetic Resources in Germany • passport data for approximatly 160,000 accession • of more than 1,800 species in 53 holding institutions • source: most important German genebanks (IPK and BAZ) • and other national ex situ collections. • www.genres.de/pgrdeu • FGRDEU - Holdings of Forest Genetic Resources in Germany • Data on 130 principal and secondary trees and shrub species • www.genres.de/fgrdeu • .......

  6. Federal Information System Genetic Resources (BIG) BIG Information on in situ and ex situ PGR in Germany IPK Genebank accessions; Taxonomy of cultivated plants RUB Collections of German botanical Gardens BIG Integrated information system combining distributed and heterogeneous databases ZADI Information technology Ex situ resources BfN Wild flora of Germany; Protected species BfN Wild flora of Germany; Protected species BfN: Federal Agency for Nature Conservation, Bonn RUB: Botanical Garden Ruhr-University Bochum, Accosiation of Botanic Gardens in Germany, Bochum IPK: Institute for Plant Genetics and Crop Plant Research, Gatersleben ZADI: German Centre for Documentation and Information in Agriculture, Bonn

  7. Federal Information System Genetic Resources (BIG) BIG User Taxonomy Geography Descriptors BIG Cross-Data Base Search Ex situ In situ Sources of PGR in Germany

  8. European Cooperative Programme (ECP/GR) Steering Committee Coordinating Secretariat Cereals Network Forages Network Vegetables Network Grain Legumes Network Fruit Network Minor crops Network Industrial crops and potato Network Documentation and Information Network In situ and on farm conservation Network Technical cooperation Network

  9. ECP/GR-Network on Documentation and Information ECP/GR-Network on Documentation and Information present focus: • Ex-situ-Collections • Passport data • Characterization data • Evaluation data future relevance: • In-situ-occurrence (incl. „onfarm.“) • cultivated plants in • agriculture, horticulture, fruit growing, viticulture • wild relatives of cultivated plants

  10. ECP/GR-Network on Documentation and Information • Information Elements (selection) • online products (increasing importance) • ECP/GRwebsite • http://www.ecpgr.cgiar.org/Networks/Info_doc/info_doc.htm • National Inventories • focus on passport data • European Search Catalogue (EURISCO) • focus on a subset of National Inventories´ data • European Central Crop Databases (ECCDB) • in future focus on characterization and evaluation data • data exchange format • IPGRI/FAO Multicrop Passport Descriptors

  11. Workshop ECP/GR Documentation and Information Network PGR-Forum, EPGRIS (final meeting) Praha, Czech Republic

  12. WP3: Workshop „Data management methodologies“ Agenda based upon the project proposal: Deliverables: D09: Define appropiate in situ genetic conservation data types D10: Design appropriate database structures and data visualisation tools D11: Design in situ genetic conservation data management and analysis techniques including GIS D12: Publish data management methodology

  13. Workshop Do we have distribution maps on all the species? How does distribution match with protected areas ? What do we really know if a population is within a nature park ? What about populations outside protected areas ? What do we have to know about data quality if we mix data from different sources ? Which Standards?

  14. Distribution of Vicia sativa subsp. sativa in Germany Data source: Bundesamt f. Naturschutz (BfN)

  15. Distribution of Vicia sativa subsp. Sativa in Germany Occurence of Vicia sativa ssp. Sativa in protected areas Protected areas (selection) Data source:Bundesamt f. Naturschutz (BfN)

  16. Same species, different mapping organisations, different statements

  17. Workshop Preparations prior to WS 3 Products form WS 1: Debate (followed up by Email): „GIS-Dataset“: Protected Areas Elevation Climate Soil Vegetation Ecological Regions ........ species list  data types  -> Survey Distribution maps available? (wild species) GIS-Datasets available? Meta data? (source, scale, quality,.....)

  18. Workshop 3 Session 1: Data types - data availability - review of survey results - data sources (in situ | on farm) - specimens, herbaria Session 2: Data management - quality standards - data security, IPR - maintenance, stewardship, - data use - target population management data - associated population management data

  19. Workshop 3 Session 3: Analysis techniques - spatial analysis - numeric analysis - modelling - .... - space and time Session 4: Visualisation tools - which tools available - what else is needed - open source - Internet - PC - change in time - ....

  20. Workshop 3 • Session 5: Data(base) structures • - Standards (OpenGIS, GML, ...) • - Definition of data structure • for in situ conservation • (in situ | on farm) • Session 6: Relationship between PGR-Forum • and EPGRIS data(base)structures • technical matters • Multicrop Passport Descriptor List • exchange format ex situ data • exchange format in situ data ? • Organisational matters Publication of Data management methodology

  21. Workshop 3 • WS - Products • List of data types (spatial data and non spatial data) • Meta-Data for these data types • Methodology for data management • Methodology for analysis techniques • Visualisation tools • Data structure for exchange • Organisation structure for exchange

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